python main.py Fig.S1A_AID-BE4max-NG-rep2_S96_L001_R1_001.fastq.gz out/Fig.S1A_AID-BE4max-NG-rep2_S96_L001_R1_001 -a GGGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCGCCGCCGCAGGCACAGCCGCTGCTGCCTCAGCCGCAGCC --no_trim
python main.py Fig.S1A_AID-BE4max-NG-rep3_S60_L001_R1_001.fastq.gz out/Fig.S1A_AID-BE4max-NG-rep3_S60_L001_R1_001 -a GGGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCGCCGCCGCAGGCACAGCCGCTGCTGCCTCAGCCGCAGCC --no_trim
python main.py Fig.S1A_eA3A-BE4max-NG-rep1_S6_L001_R1_001.fastq.gz out/Fig.S1A_eA3A-BE4max-NG-rep1_S6_L001_R1_001 -a GGGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCGCCGCCGCAGGCACAGCCGCTGCTGCCTCAGCCGCAGCC --no_trim
python main.py Fig.S1A_eA3A-BE4max-NG-rep2_S94_L001_R1_001.fastq.gz out/Fig.S1A_eA3A-BE4max-NG-rep2_S94_L001_R1_001 -a GGGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCGCCGCCGCAGGCACAGCCGCTGCTGCCTCAGCCGCAGCC --no_trim
python main.py Fig.S1A_eA3A-BE4max-NG-rep3_S58_L001_R1_001.fastq.gz out/Fig.S1A_eA3A-BE4max-NG-rep3_S58_L001_R1_001 -a GGGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCGCCGCCGCAGGCACAGCCGCTGCTGCCTCAGCCGCAGCC --no_trim
python main.py Fig.S1A_eA3A-BE5max-NG-rep1_S7_L001_R1_001.fastq.gz out/Fig.S1A_eA3A-BE5max-NG-rep1_S7_L001_R1_001 -a GGGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCGCCGCCGCAGGCACAGCCGCTGCTGCCTCAGCCGCAGCC --no_trim
python main.py Fig.S1A_eA3A-BE5max-NG-rep2_S95_L001_R1_001.fastq.gz out/Fig.S1A_eA3A-BE5max-NG-rep2_S95_L001_R1_001 -a GGGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCGCCGCCGCAGGCACAGCCGCTGCTGCCTCAGCCGCAGCC --no_trim
python main.py Fig.S1A_eA3A-BE5max-NG-rep3_S59_L001_R1_001.fastq.gz out/Fig.S1A_eA3A-BE5max-NG-rep3_S59_L001_R1_001 -a GGGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCGCCGCCGCAGGCACAGCCGCTGCTGCCTCAGCCGCAGCC --no_trim
